EventsCalendar

May 4

Computing on gene functions and phenotypes in plants

  • 4:10 PM - 5:00 PM
  • Research Seminars

    Abstract: Predictions about gene function and phenotype guide hypothesis development. As such, the quality and availability of these types of data strongly influence the rate of progress for research. In my research group, we are working to generate tools that predict gene function in an easy-to-use and reproducible way and to automate phenotype associations in plants. This seminar will describe: (1) Genome-wide gene function annotations and their potential for comparative functional genomics analyses; and (2) Natural language processing to enable the use of free text phenotype descriptions for computing on similarities across phenotypes. For both projects, example use cases will be presented. For access to the gene function prediction tool called GOMAP, visit https://bioinformapping.com/gomap/. A list of annotated plant genomes is maintained at https://dill-picl.org/projects/gomap/. For access to phenotype similarity tool called QuOATS, visit https://quoats.dill-picl.org/.

     

    Speaker: Carolyn J. Lawrence-Dill, Professor in the Department of Agronomy and the Department of Genetics, Development, and Cell Biology

     

    Contact Information: Danise Jones, danisej@iastate.edu

     

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    Have a research seminar to share with the Iowa State University research community? Fill out the OVPR’s campus-wide research seminar calendar submission form, which can be found here. Questions about submitting seminar information should be directed to Research Success Coordinator Tyler Stricker at stricker@iastate.edu.


    Location

    Virtual

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